Global analysis of fungal morphology exposes mechanisms of host cell escape.
O’Meara, T.R., Veri, A.O., Ketela, T., Jiang, B., Roemer, T. and Cowen, L.E.
Nature Communications, 2015.

A highly conserved program of neuronal microexons is misregulated in autistic brains.
Irimia, M., Weatheritt, R.J., Ellis, J., Parikshak, N.N., Babor, M., Quesnel-Vallieres, M., Tapial, J., Gonatopoulos-Pourtnazis, T., Raj, B., O’Hanlon, D., Barrios-Rodiles, M., Sternberg, M.J.E., Wrana, J.L., Roth, F.P., Geschwind, D.H. and Blencowe, B.J.
Cell, 2014.

Miniature shRNA Screens to characterize Antiproliferative drugs.
Kittanakom, S., Arnoldo, A., Brown, K.R., Wallace, I., Kunavisarut.T, Torti, D., Heisler, L.E., Surendra, A., Moffat, J., Giaever, G. and Nislow, C.
G3, 2013.

MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.
Han, H., Irimia, I., Ross, P.J., Sung, H-K., Alipanahi, B., David, L., Golipour, A., Gabut, M., Michael, I.P., Nachman E.N., Wang, E., Trcka, D., Thompson, T., O’Hanlon, D., Slobodeniuc, V., Barbosa-Morais, N.L., Burge, C.B., Moffat, J., Frey, B.J., Nagy, A., Ellis, J., Wrana, J.L. and Blencowe, B.J.
Nature, 2013.

Phylogenetic reconstruction of the Legionella pneumophila Philadelphia-1 Laboratory strains through comparative genomics.
Rao,C., Benhabib, H. and Ensminger, A.W.
PLoS One, 2013.

MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data sets.
Kim T, Tyndel MS, Huang H, Sidhu SS, Bader GD, Gfeller D, Kim PM.
Nucleic Acids Research, 2012.

Functional analysis with a barcoder yeast gene overexpression system.
Douglas AC, Smith AM, Sharifpoor S, Yan Z, Durbic T, Heisler LE, Lee AY, Ryan O, Göttert H, Surendra A, van Dyk D, Giaever G, Boone C, Nislow C, Andrews BJ.
G3 (Bethesda), 2012.

Barcode sequencing for understanding drug-gene interactions.
Smith AM, Durbic T, Kittanakom S, Giaever G, Nislow C.
Methods in Molecular Biology, 2011.

An alternative splicing switch regulates embryonic stem cell pluripotency and reprogramming.
Gabut M, Samavarchi-Tehrani P, Wang X, Slobodeniuc V, O’Hanlon D, Sung HK, Alvarez M, Talukder S, Pan Q, Mazzoni EO, Nedelec S, Wichterle H, Woltjen K, Hughes TR, Zandstra PW, Nagy A, Wrana JL, Blencowe BJ.
Cell, 2011.

SnapShot: High-throughput sequencing applications.
Han H, Nutiu R, Moffat J, Blencowe BJ.
Cell, 2011.

The draft genome and transcriptome of Cannabis sativa.
van Bakel H, Stout JM, Cote AG, Tallon CM, Sharpe AG, Hughes TR, Page JE.
Genome Biology, 2011.

Competitive genomic screens of barcoded yeast libraries.
Smith AM*, Durbic T*, Oh J*, Urbanus M, Proctor M, Heisler LE, Giaever G, Nislow C.
JOVE Visual Exp., 2011.

A comprehensive platform for highly multiplexed mammalian functional genetic screens.
Ketela T, Heisler LE, Brown KR, Ammar R, Kasimer D, Surendra A, Ericson E, Blakely K, Karamboulas D, Smith AM, Durbic T, Arnoldo A, Cheung-Ong K, Koh JL, Gopal S, Cowley GS, Yang X, Grenier JK, Giaever G, Root DE, Moffat J, Nislow C.
BMC Genomics, 2011.